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BMC Ecology and Evolution

Springer Science and Business Media LLC

All preprints, ranked by how well they match BMC Ecology and Evolution's content profile, based on 51 papers previously published here. The average preprint has a 0.04% match score for this journal, so anything above that is already an above-average fit. Older preprints may already have been published elsewhere.

1
De novo evolution of transmissible tumors in Hydra

Tissot, S.; Meliani, J.; Boutry, J.; Brazier, L.; Tökkölyi, J.; Roche, B.; Ujvari, B.; Nedelcu, A. M.; Thomas, F.; Dujon, A. M.

2024-03-14 evolutionary biology 10.1101/2024.03.13.584762 medRxiv
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While most cancers are not transmissible, there are rare cases where cancer cells have acquired the ability to spread vertically or horizontally to other individuals, and sometimes species, causing epidemics in their hosts. However, as these transmissible cancers are usually detected once they are relatively well disseminated in host populations, the conditions associated with their origin remain poorly understood. Using the freshwater cnidarian Hydra oligactis, which exhibits spontaneous tumor development that in some strains became vertically transmitted, this study presents the first experimental observation of the evolution of a transmissible tumor. Specifically, we assessed the initial vertical transmission rate of spontaneous tumors and explored the potential for optimizing this rate through artificial selection. One of the hydra strains, which evolved transmissible tumors over five generations, was characterized by analysis of cell type and microbiome, as well as assessment of life-history traits. Our findings indicate that tumor transmission can be immediate for some strains and can be enhanced by selection. The resulting tumors are characterized by overproliferation of large interstitial stem cells and, in contrast with other transmissible tumors on Hydra, are not associated with a specific microbiome. Furthermore, although tumor transmission has only been established over 5 generations, it was sufficient to alter life-history traits in the host, suggesting a compensatory response. This work, therefore, makes the first contribution to understanding the conditions of transmissible cancer emergence and their short-term consequences for the host.

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Phylogeographical evidence for historical long-distance dispersal in the flightless stick insect Ramulus mikado

Suetsugu, K.; Nozaki, T.; Shun, H.; Funaki, S.; Ito, K.; Isagi, Y.; Suyama, Y.; Fukushima, S.

2023-05-15 evolutionary biology 10.1101/2023.05.15.540668 medRxiv
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Exploring how organisms overcome geographical barriers to dispersal is a fundamental question in biology. Passive long-distance dispersal events, although infrequent and unpredictable, have a considerable impact on species range expansions. Despite limited active dispersal capabilities, many stick insect species have vast geographical ranges, indicating that passive long-distance dispersal is vital for their distribution. A potential mode of passive dispersal in stick insects is via the egg stage within avian digestive tracts, as suggested by experimental evidence. However, detecting such events under natural conditions is challenging due to their rarity. To indirectly assess the importance of historical avian-mediated dispersal, we examined the population genetic structure of the flightless stick insect Ramulus mikado based on a multifaceted molecular approach (COI haplotypes, nuclear SSR markers, and genome-wide SNPs). Subsequently, we identified unique phylogeographic patterns, including the discovery of identical COI genotypes spanning considerable distances, which substantiates the notion of passive long-distance genotypic dispersal. Overall, all the molecular data revealed low and mostly non-significant genetic differentiation among populations, with identical or very similar genotypes across distant populations. We propose that long-distance dispersal facilitated by birds is the most plausible explanation for the unique phylogeographic pattern observed in this flightless stick insect.

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The transcriptomic signature of physiological trade-offs caused by larval overcrowding in Drosophila melanogaster

Morimoto, J.; Derous, D.; Wenzel, M.; Henry, Y.; Colinet, H.

2022-01-09 ecology 10.1101/2022.01.07.475433 medRxiv
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Intraspecific competition at the larval stage is an important ecological factor affecting life-history, adaptation and evolutionary trajectory in holometabolous insects. However, the molecular pathways and physiological trade-offs underpinning these ecological processes are poorly characterised. We reared Drosophila melanogaster at three egg densities (5, 60 and 300 eggs/ml) and sequenced the transcriptomes of pooled third-instar larvae. We also examined emergence time, egg-to-adult viability, adult mass and adult sex-ratio at each density. Medium crowding had minor detrimental effects on adult phenotypes compared to low density and yielded 24 differentially expressed genes (DEGs) including several chitinase enzymes. In contrast, high crowding had substantial detrimental effects on adult phenotypes and yielded 2107 DEGs. Among these, upregulated gene sets were enriched in sugar, steroid and amino acid metabolism as well as DNA replication pathways, whereas downregulated gene sets were enriched in ABC transporters, Taurine, Toll/Imd signalling and P450 xenobiotics metabolism pathways. Overall, our findings show that larval overcrowding has a large consistent effect on several molecular pathways (i.e., core responses) with few pathways displaying density-specific regulation (i.e., idiosyncratic responses). This provides important insights into how holometabolous insects respond to intraspecific competition during development.

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MORPHIX: Resolving sample identification bias in morphometrics analysis with a supervised machine learning package

Mohseni, N.; Elhaik, E.

2023-12-08 evolutionary biology 10.1101/2023.12.06.570437 medRxiv
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Evolutionary biologists, primarily palaeoanthropologists, anatomists and ontogenists, employ modern geometric morphometrics to quantitatively analyse physical forms (e.g., skull morphology) and explore relationships, variations, and differences between samples and taxa using landmark coordinates. The standard approach comprises two steps: Generalised Procrustes Analysis (GPA) followed by Principal Component Analysis (PCA). PCA projects the superimposed data produced by GPA onto a set of uncorrelated variables, which can be visualised on scatterplots and used to draw phenetic, evolutionary, and ontogenetic conclusions. Recently, the use of PCA in genetic studies has been challenged. Due to PCAs central role in morphometrics, we sought to evaluate the standard approach and claims based on PCA outcomes. To test PCAs accuracy, robustness, and reproducibility using benchmark data of the crania of five papionin genera, we developed MORPHIX, a Python package for processing superimposed landmark data with classifier and outlier detection methods, which can be further visualised using various plots. Throughout this manuscript, we address the recent and contentious use of PCA in physical anthropology and phylogenetic inference, such as the case of Homo Nesher Ramla, an archaic hominin with a questionable taxonomy. We found that PCA outcomes are artefacts of the input data and are neither reliable, robust, nor reproducible as field members may assume. We also found that supervised machine learning classifiers are more accurate both for classification and detecting new taxa. Our findings raise concerns about PCA-based findings applied in 18,400 to 35,200 Physical anthropology studies. Our work can be used to evaluate prior and novel claims concerning the origins and relatedness of inter- and intra-species and improve phylogenetic and taxonomic reconstructions.

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Misaligned plastic and evolutionary responses of lifespan to novel carbohydrate diets

Narayan, V.; Wasana, N.; Wilson, A.; Chenoweth, S.

2022-11-16 evolutionary biology 10.1101/2022.11.14.516515 medRxiv
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Diet elicits varied effects on longevity across a wide range of animal species. For example, diets low in protein and high in carbohydrate typically extend lifespan while diets high in protein tend to reduce it. Although studies have also shown that diet-induced lifespan changes can persist through transgenerational plasticity, whether such changes lead to evolutionary shifts in lifespan remains unclear. In this study we combine experimental evolution and phenotypic plasticity assays to address this gap. Using Drosophila serrata, we investigated the evolutionary potential of lifespan in response to four novel diets spanning a carbohydrate-protein gradient. We also examined developmental plasticity effects using a set of control populations that were raised on the four novel environments. Our results show that although lifespan evolved in response to changes in dietary carbohydrate concentration, the plastic responses for lifespan differed from the evolved responses. The direction of the evolved response (increased lifespan) observed on low carbohydrate diets was in the opposite direction to the plastic response (decreased lifespan). Our results imply that plastic responses to low carbohydrates can be maladaptive for lifespan and misaligned with the evolved responses, laying the groundwork for future investigations of carbohydrate contributions to evolved and plastic effects on lifespan.

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Evolution of cross-tolerance to environmental stresses in populations of Drosophila melanogaster selected for increased resistance to cold stress

Singh, K.; Prasad, N. G.

2020-04-19 evolutionary biology 10.1101/2020.04.19.047746 medRxiv
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Cold stress is a critical environmental challenge that affects an organisms fitness-related traits. In Drosophila, increased resistance to specific environmental stress may lead to increased resistance to other kinds of stress. In the present study, we aimed to understand whether increased cold stress resistance in Drosophila melanogaster can facilitate their ability to tolerate other environmental stresses. For the current study, we used successfully selected replicate populations of D. melanogaster against cold shock and their control population. These selected populations have evolved several reproductive traits, including increased egg viability, mating frequency, male mating ability, ability to sire progenies, and faster recovery for mating latency under cold shock conditions. In the present work, we investigated egg viability and mating frequency with and without heat and cold shock conditions in the selected and their control populations. We also examined resistance to cold shock, heat shock, desiccation, starvation, and survival post-challenge with Staphylococcus succinus subsp. succinus PK-1 in the selected and their control populations. After cold-shock treatment, we found a 1.25 times increase in egg viability and a 1.57 times increase in mating frequency in the selected populations compared to control populations. Moreover, more males (0.87 times) and females (1.66 times) of the selected populations survived under cold shock conditions relative to their controls. After being subjected to heat shock, the selected populations egg viability and mating frequency increased by 0.30 times and 0.57 times, respectively, compared to control populations. Additionally, more selected males (0.31 times) and females (0.98 times) survived under heat shock conditions compared to the control populations. Desiccation resistance slightly increased in the females of the selected populations relative to their control, but we observed no change in the case of males. Starvation resistance decreased in males and females of the selected populations compared to their controls. Our findings suggest that the increased resistance to cold shock correlates with increased tolerance to heat stress, but this evolved resistance comes at a cost, with decreased tolerance to starvation.

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Long-term cold adaptation leads to increased thermal plasticity of male body size and thermal canalization of fecundity in populations of Drosophila melanogaster: an experimental evolution study

Roy, R.; Chattopadhyay, A.; Deb Sharma, S.; Mondal, A.; Biswas, P.; Ghosh, S. M.

2023-11-15 evolutionary biology 10.1101/2023.11.13.566815 medRxiv
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From laboratory populations of Drosophila melanogaster maintained at 25{degrees}C for many decades, new populations were derived and maintained at 17{degrees}C for over 60 generations. Fitness traits such as body size and fecundity of the cold and warm selected populations were quantified at both 17{degrees}C and 25{degrees}C. Flies from both selection regimes had similar body weight when grown at 25{degrees}C, but 17{degrees}C selected males had greater dry weight and less relative water content than 25{degrees}C selected males, when grown at 17{degrees}C. Cold selected males thus evolved greater thermal plasticity of body weight and density compared to controls. Fecundity data showed, 25{degrees}C selected females laid less eggs at 17{degrees}C compared to 25{degrees}C treatment, but 17{degrees}C selected females did not show significant difference in fecundity between 25{degrees}C and 17{degrees}C. Cold evolved flies thus showed thermal canalization of fecundity, possibly buffering the repressing effect of cold. Whether or not (i) greater body mass and density of cold evolved males, and (b) unrepressed fecundity of cold evolved females, both observed when reared at cold, are causally related, remain to be investigated. The study thus shows thermal selection can lead to evolution of greater thermal plasticity in a trait, while result in thermal canalization of another.

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Intra- and interspecific variations in genome sizes of Agaricia corals from Curacao

Ranises, D. M. L.; Gonzalez, M. J. V.; Tawfeeq, M. M.; Gaudray, F. R.; Malay, M. C. D.; Vermeij, M.; Flot, J.-F.

2023-08-23 evolutionary biology 10.1101/2023.08.23.554453 medRxiv
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Genome size is a fundamental biological trait that is known to exhibit high diversity among eukaryotic species, but its intraspecific diversity has only scarcely been studied to date. In scleractinian corals, genome size data are only available for a few species. In this study, intra- and interspecific variations in genome size of the coral genus Agaricia collected from Curacao were investigated. Morphology was congruent with genetic analyses of the nuclear markers internal transcribed spacer 2 (ITS2) and L-threonine 3-dehydrogenase (TDH) in delimiting three Agaricia species among our samples. A refined Feulgen Image Analysis Densitometry (FIAD) protocol yielded genome sizes that ranged from 0.359 pg to 0.593 pg within this genus (a 1.7-fold range). The highest intraspecific variation in genome size was recorded in the depth-generalist A. lamarcki (1.5-fold range), followed by the depth specialist A. humilis (1.4-fold range) and A. agaricites (1.3-fold range), the species with an intermediate depth distribution. The mean genome size of A. agaricites (0.495 pg) was significantly larger than that of A. lamarcki (0.448 pg) and A. humilis (0.434 pg). No correlation between average genome size and nucleotide polymorphism{pi} was detected, but we found an almost linear correlation between intraspecific variance of genome size and{pi} of ITS2 (Pearsons r = 0.984, p = 0.113). Genome size and collection depths of both A. lamarcki (Pearsons r = 0.328, p = 0.058) and A. agaricites (Pearsons r = -0.270, p = 0.221) were also not significantly associated. To our knowledge, this study provides the first account of intraspecific variation in corals; the apparent correlation detected between the nucleotide polymorphism of a species and the variance of its genome size will have to be tested using a larger taxonomic spectrum of scleractinian corals as well as in other groups of animals.

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Drosophilid cuticle pigmentation impacts body temperature

Freoa, L.; Chevin, L.-M.; Christol, P.; Meleard, S.; Rera, M.; Veber, A.; Gibert, J.-M.

2022-12-05 evolutionary biology 10.1101/2022.12.03.518031 medRxiv
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Cuticle pigmentation has been clearly demonstrated to impact body temperature for several relatively large species of insects, but it was questioned for small insects. Here we used a thermal camera to assess the impact of drosophilid cuticle pigmentation on body temperature when individuals are exposed to light. We compared mutants of large effects within species (Drosophila melanogaster ebony and yellow mutants). Then we analyzed the impact of naturally occurring pigmentation variation within species complexes (Drosophila americana/Drosophila novamexicana and Drosophila yakuba/Drosophila santomea). Finally we analyzed lines of D. melanogaster with moderate differences in pigmentation. We found significant differences in temperatures for each of the four pairs we analyzed. The temperature differences appeared to be proportional to the differently pigmented area: between Drosophila melanogaster ebony and yellow mutants or between Drosophila americana and Drosophila novamexicana, for which the whole body is differently pigmented, the difference in temperatures was around 0.6{degrees}C {+/-}0.2{degrees}C. By contrast, between D. yakuba and D. santomea or between Drosophila melanogaster Dark and Pale lines, for which only the posterior abdomen is differentially pigmented, we detected a temperature difference of about 0.14{degrees}C {+/-}0.10{degrees}C. This demonstrates that cuticle pigmentation has ecological implications in drosophilids regarding adaptation to environmental temperature.

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Gene expression responses to environmental cues shed light on components of the migratory syndrome in butterflies

Shipilina, D.; Höök, L.; Näsvall, K.; Talla, V.; Palahi, A.; Parkes, E.; Vila, R.; Talavera, G.; Backström, N.

2024-07-19 evolutionary biology 10.1101/2024.07.17.602486 medRxiv
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Migration is a complex behavior involving the synchronisation of many physiological and behavioral processes. Environmental cues must thus be interpreted to make decisions regarding resource allocation between, for example, migration or reproduction. In butterflies, the lack of host plants to sustain a new generation may indicate the need to migrate. Here, we used the painted lady butterfly (Vanessa cardui) as a model to characterize gene expression variation in response to host plant availability. Assessment of the response to host plant availability in adult female butterflies revealed significant modifications in gene expression, particularly within hormonal pathways (ecdysone oxidase and juvenile hormone esterase). We therefore hypothesize that tuning the ecdysone pathway may play a crucial role in regulating the timing of migration and reproduction in adult female painted lady butterflies. In addition, our analysis revealed significant enrichment of genes associated with lipid, carbohydrate, and vitamin biosynthesis, as well as the immune response. As environmental acquisition occurs throughout the life cycle, we also tracked gene expression responses to two other environmental cues across major developmental stages. Differences in both larval crowding and host plant availability during development resulted in significant changes in the expression of genes involved in development, reproduction and metabolism, particularly at the instar V larval stage. In summary, our results offer novel insights into how environmental cues affect expression profiles in migratory insects and highlight candidate genes that may underpin the migratory syndrome in the painted lady butterfly.

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Habitat correlates of cave-dwelling: A radiation-scale analysis of skin traits and comparative transcriptomics of the Sinocyclocheilus cavefish

Luo, X.; Chen, B.; Mao, T.; Liu, Y.; Yang, J.; Meegaskumbura, M.

2023-07-17 evolutionary biology 10.1101/2023.07.16.549170 medRxiv
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With 78 species, Sinocyclocheilus cavefish constitute the largest cavefish radiation in the world. They exhibit remarkable morphological diversity across three habitat types: surface (Surface morphs, Normal-eyed, variably colored), exclusively-cave-dwelling (Stygobitic morphs, Eyeless, depigmented), and intermediate between cave and surface (Stygophilic morphs, Micro-eyed, partially depigmented). Distinctive traits of Sinocyclocheilus include variations in eye and skin conditions associated with their habitat, despite the role of the skin in sensing environmental changes, its habitat correlates are less understood, compared to the well-studied eye conditions. Here, we analyzed the correlation between Sinocyclocheilus skin morphology and its habitat, utilizing morphological and transcriptomics-based methods. We generated RNA-sequencing data for nine species and integrated those with existing data from five additional species. These 14 species represent the primary clades and major habitats of these cavefish. Data on skin color and scale morphology were generated and 7374 orthologous genes were identified. Using a comparative transcriptomics approach, we identified 1,348 differentially expressed genes (DEGs) in the three morphotypes. GO and KEGG enrichment analyses suggest that these species have evolved different strategies for energy metabolism, immunity, and oxidative stress in different habitats. We also found 329 positive selection genes (PSGs) in the skin of these species that are mainly involved in immunity, apoptosis, and necrosis, indicating potential adaptations to their habitats. The maximum likelihood phylogenetic tree, based on 1369 single-copy orthologous genes of the species, was largely concordant with the currently established RAD-seq and mt-DNA based phylogenies, but with a few exceptions. Species with higher cave dependence present lighter coloration, fewer dark blotches, and diminished scale morphology and coverage. PCA and cluster analysis suggested that cave-dwelling species, characterized by the absence of black blotches, have similar expression patterns, indicating convergence in cave adaptation. Variations in tyrosine metabolism may explain pigmentation differences among species in diverse habitats. Our study highlights the significance of habitat in shaping skin metabolism, pigmentation variation, and morphology while offering insights into the molecular mechanisms driving these habitat-specific adaptations in Sinocyclocheilus. These findings underscore the transcriptional variation in adapting to diverse environments and contribute to future studies on the evolution and ecology of cavefish.

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Genomic insights into the local adaptation of spontaneously occurring populations of olive trees (Olea europaea ssp. europaea var. sylvestris) in the Mediterranean Basin

Zunino, L.; Sarah, G.; Rocchetti, L.; Rhone, B.; Soriano, A.; Droc, G.; Mournet, P.; El Bakkali, A.; Costes, E.; Khadari, B.; Cubry, P.

2025-08-04 evolutionary biology 10.1101/2025.08.04.668140 medRxiv
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Living organisms are increasingly threatened by significant environmental changes, primarily driven by human-induced global alterations. Understanding and forecasting species adaptive responses to these environmental changes is therefore crucial for enhancing conservation efforts. In the Mediterranean Basin (MB), the average temperature is rising at a rate 20% faster than the global average, placing regional biodiversity at heightened risk. The study of local adaptation is thus particularly relevant. In the western MB, spontaneously occurring olive populations consist of both wild olives and admixed resulting of crop-to-wild gene flow. The wild is likely harbouring adaptive genetic variation shaped by local environmental pressures. In this study, we analysed target genomic sequencing data from spontaneously occurring populations (comprising both wild and admixed trees) as well as cultivated olive trees. We performed selective sweep and GEA analyses in wild olives to identify genomic regions associated with environmental variables. Our findings identified signatures of adaptation particularly associated with precipitation and temperature. Notably, admixed individuals retained many wild candidate SNPs in their genomes suggesting that they might retain a certain level of adaptation to their local environment. Those results are in line with recent studies suggesting hybrids could adapt more rapidly to novel environments than their parental populations. Key-words: Local adaptation, selective sweep detection, crop-to-wild gene flow, Olea europaea L., population genomics, genome-environment association

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A supergene in seaweed flies modulates male traits and female perception

Enge, S.; Merot, C.; Mozuraitis, R.; Apsegaite, V.; Bernatchez, L.; Martens, G. A.; Radziute, S.; Pavia, H.; Berdan, E. L.

2021-07-01 evolutionary biology Community evaluation 10.1101/2021.06.30.450538 medRxiv
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Supergenes, tightly linked allelic combinations that underlie complex adaptive phenotypes represent a critical mechanism protecting intra-specific polymorphism [1, 2]. Supergenes represent some of the best examples of balancing selection in nature and there is increasing evidence that disassortative mating, when individuals preferentially mate with dissimilar phenotypes, is a key force stabilizing supergene polymorphisms. Yet, the underlying biological mechanisms and genetic basis of disassortative mating remain poorly known. Here, we examine a possible mechanism of disassortative mating driven by female mate choice in relation to the overdominant Cf-Inv(1) supergene in the seaweed fly Coelopa frigida by investigating chemical communication and its genomic architecture. We show that Cf-Inv(1) strongly affects chemical signaling; cuticular hydrocarbon (CHC) composition differed between genotypes in males but not females across two continents. In tandem, Cf-Inv(1) affected female perception of these compounds; females are able to sense 36 compounds from the male CHC cocktail but show differential perception between genotypes for almost half of them. This indicates that the genetic underpinnings of male traits and female perceptions are tightly linked within Cf-Inv(1) which likely facilitates disassortative mating [3]. A differential expression approach based on candidate genes for CHC biosynthesis and odorant detection revealed differential expression for CHC biosynthesis in males alone but broad changes in odorant receptors across both sexes. Furthermore, odorant genes clustered together within Cf-Inv(1), with some of them differing between arrangements by 8.3% at the protein level, suggesting evolution via tandem duplication then divergence. We propose that the tight linkage between overdominant loci, male traits, and female perception has helped to maintain the Cf-Inv(1) polymorphism across its range in the face of supergene degeneration.

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Men in menopause? Experimental verification of the mate choice theory of menopause with Drosophila melanogaster

Singh, R. S.; Purohith, D.; Chaudhary, M.; Rajapakse, N.; Gomes, A.

2022-04-19 evolutionary biology 10.1101/2022.04.18.488714 medRxiv
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Various hypotheses regarding the origin of menopause have been proposed, and although the kin-selection-based theory appears promising, it involves population genetic processes that are insufficient to compensate for loss of fitness. The grandmother hypothesis and its variation the live long hypothesis are untenable; the former requires "climbing a steep fitness hill", as grandmothers share only 25% of their genes with their grandchildren, compared to 50% with their direct offspring, while the latter proposes a prolongation of the post-menopausal lifespan through selection, which is impossible in a population of non-reproducing females. The mate choice theory explains menopause as the result of asymmetric mating involving younger females and older males that leads to an accumulation of infertility mutations and the evolution of menopause in older females. In this study, we investigated the mate choice theory using an infertility mutation accumulation experiment with Drosophila melanogaster that involved mating between individuals of different age groups. After 70 generations of asymmetric mating, the results showed that younger females who were paired with older males showed declining fertility in old age. The same trend was noted with younger males when mated with older females; the fertility of the males declined in old age. These results support the mate choice theory and indicate that menopause is not a life history trait of females but of the sex of the younger mate. Mate choice theory treats the evolution of menopause and post-menopausal lifespan as independent traits that are driven by the mate choices exercised by older males. Menopause may be an atypical process because the evolutionary mechanism (age-restricted asymmetric mating) involved is rarely observed.

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Male accessory gland size depends on genotypes but not larval density conditions in nutrition-rich environments

Patlar, B.; Japke, L.; Moehring, S.; Fricke, C.

2025-05-26 evolutionary biology 10.1101/2025.05.21.655081 medRxiv
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Accessory glands (AGs), responsible for producing seminal fluid, are critical for male reproductive success, especially under sperm competition. In Drosophila melanogaster, AG size is often used as a proxy for reproductive investment, but its variation in response to developmental environments, as well as distinct genotypes remain unclear. Here, we investigated how larval density without nutritional limitation per individual, genotype, and genotype-by-environment interactions (GEIs) influence AG size using 27 isogenic lines from the Drosophila Genetic Reference Panel (DGRP). While larval density significantly affected body size, with higher density producing smaller males even though their nutritional source is rich, we could not detect any effect on AG size, either in absolute terms or relative to body size. In contrast, AG size varied significantly among genotypes, with only minor GEI effects. Our findings suggest that AG size might be genetically determined and relatively insensitive to larval density cues under nutrient-rich conditions. These results highlight the limitations of using AG size as a sole proxy for reproductive investment and the importance of genotype in shaping male reproductive traits.

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The feedback loop of the transformer gene results in proper feminization under multiple sex determination signals in the ant, Vollenhovia emeryi

Miyakawa, M. O.; Miyakawa, H.

2022-12-16 evolutionary biology 10.1101/2022.12.14.520459 medRxiv
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Organisms that reproduce sexually have evolved highly sophisticated mechanisms to generate two sexes. Some hymenopterans (such as ants, bees, and wasps) have a complementary sex-determination system in which heterozygosity at one CSD locus induces female development, whereas hemi- or homozygosity at the locus induces male development. This system can generate a high cost of inbreeding, as individuals that are homozygous at the locus become sterile, diploid males. On the other hand, some hymenopterans have evolved a multi-locus, complementary, sex-determination system in which heterozygosity in at least one CSD locus induces female development. This system effectively reduces the proportion of sterile diploid males; however, how multiple primary signals pass through a molecular cascade to regulate the terminal sex-determination gene has remained unclear. To clarify this matter, we investigated the molecular cascade in the ant, Vollenhovia emeryi, with two CSD loci. Here we show that transformer (tra) is necessary for proper feminization. Expression and functional analysis showed that individuals heterozygous in at least one of the two CSD loci develop into females. Individuals heterozygous at only a single CSD locus do not develop into sexual intermediates, because the signal derived from the heterozygous CSD is amplified by a positive-feedback splicing loop of tra. Our data also demonstrate that tra controls splicing of doublesex (dsx), which is involved in sexual differentiation. We suggest a cascade model to arrive at a binary determination of sex under multiple primary signals.

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Cuticular hydrocarbon divergence in Drosophila melanogaster populations evolving under differential operational sex ratios

Dutta, R.; Chechi, T. S.; Yadav, A.; Prasad, N. G.

2020-07-13 evolutionary biology 10.1101/351718 medRxiv
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The ability of interlocus sexual conflict to facilitate reproductive isolation is widely anticipated. However, very few experimental evolutionary studies have convincingly demonstrated the evolution of reproductive isolation due to sexual conflict. Recently a study on replicate populations of Drosophila melanogaster under differential sexual conflict found that divergent mate preference evolved among replicate populations under high sexual conflict regime. The precopulatory isolating mechanism underlying such divergent mate preference could be sexual signals such as cuticular hydrocarbons since they evolve rapidly and are involved in D. melanogaster mate recognition. Using D. melanogaster replicates used in the previous study, we investigate whether cuticular hydrocarbon divergence bears signatures of sexually antagonistic coevolution that led to reproductive isolation among replicates of high sexual conflict regime. We found that D. melanogaster cuticular hydrocarbon profiles are sexually dimorphic. Although replicate populations under high sexual conflict displayed assortative mating, we found no significant differences in the cuticular hydrocarbon profile between the high and low sexual conflict regimes. Instead we find cuticular hydrocarbon divergence patterns to be suggestive of the Buridans Ass regime which is one of the six possible mechanisms to resolve sexual conflict. Sexual selection that co-vary between populations under high and low sexual conflict regimes may also have contributed to the evolution of cuticular hydrocarbons. This study indicates that population differentiation as a result of cuticular hydrocarbon divergence cannot be credited to sexual conflict despite high sexual conflict regime evolving divergent cuticular hydrocarbon profiles.

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An interactive pipeline for multitrait evolutionary analysis in a phylogenetic framework

Basu, D. N.; Bhaumik, V.; Kunte, K.

2022-06-20 evolutionary biology 10.1101/2022.06.19.496720 medRxiv
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Comparative phylogenetic studies based on 2D image data can reveal macroevolutionary patterns and processes by integrating phylogenetic and ecological analyses. The advent of high-throughput imaging facilities has led to the accumulation of large image datasets; however, large-scale data extraction and analysis using these resources can be labour- and computation-intensive. Moreover, there are few standardized methods to analyse multitrait image-based data in a phylogenetic framework. Several packages in the R statistical environment offer utilities for processing and analysing large-scale image data. Techniques for the comparative phylogenetic analysis of multitrait data have also been introduced in other packages. However, most of these approaches are specialized for discrete purposes, and there is a lack of streamlined and efficient methodological pipelines integrating features across packages. Here, we present multEvol, an interactive pipeline for the extraction and phylogenetic analysis of shape and colour pattern data from 2D images in the R statistical computing environment. Using this pipeline, shape outlines and colour pattern data for multiple colours can be extracted, visualised, and compared in a phylogenetic framework. Using various utilities provided in the phytools, RNiftyReg, Momocs, patternize, convevol, and geiger packages, we introduce an interactive interface that allows user inputs for iterative data extraction. This pipeline provides an efficient method for the bulk processing of images of biological specimens from museum collections. As such, it has potential applications in the large-scale morphometric analysis of museum specimens to reveal macroevolutionary patterns in ecology, evolution and integrative biology.

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Divergent phenotypic plasticity of a convergent Mendelian trait in Drosophila

Francelle, P.; David, J. R.; Yassin, A.

2021-11-11 evolutionary biology 10.1101/2021.11.10.468073 medRxiv
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In Drosophila, comparisons of the thermal plasticity of pigmentation across serially homologous abdominal segments have been conducted in two species, namely Drosophila melanogaster and D. kikkawai. Pigmentation variation has different genetic architecture in the two species, being oligogenic in the former and monogenic in the later. Here, we analyze the thermal plasticity of abdominal pigmentation in a third species, D. erecta, which is phylogenetically close to D. melanogaster but like D. kikkawai has a monogenic basis for pigmentation variation. However, the underlying locus differs between D. erecta and D. kikkawai, being the X-linked melanin-synthesis gene tan in the former and the autosomal transcription factor pdm3 in the later. We found that in spite of a low overall plasticity in monogenic species compared to D. melanogaster, the two monogenic species showed divergent plasticity patterns in respect to the response to temperature and to the degree of dominance in heterozygotes. Those results provide new insights on the dependence of the degree of plasticity on the genetic architecture as well as on the extent of phenotypic convergence.

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Compensatory growth in C. elegans is regulated by a thermosensitive TRP channel and increases reproductive fitness

Sekajova, Z.; Rosa, E.; Spagopoulou, F.; Zervakis, P. I.; Lind, M. I.

2020-12-09 evolutionary biology 10.1101/2020.12.08.415851 medRxiv
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O_LIAnimals are often not growing at the maximum rate, but can compensate for a bad start of life by subsequently increasing growth rate. While this compensatory growth is widespread, its direct fitness consequences are seldom investigated and its genetic basis is unknown. C_LIO_LIWe investigated the genetic regulation, as well as fitness and lifespan consequences of compensatory growth in response to temperature, using C. elegans knockout of the thermo-sensitive TRP ion channel TRPA-1, involved in temperature recognition. We exposed juvenile worms to cold, favourable (intermediate) or warm temperatures in order to delay or speed up development. C_LIO_LIWild-type worms initially exposed to cold temperature experienced slower growth but after being switched to a more favourable temperature, they expressed compensatory growth and caught up in size. Those initially reared at warmer temperatures than favourable experienced slower growth and attained smaller adult size after being switched to the most favourable temperature. C_LIO_LICompensatory growth also altered the reproductive schedule. While rate-sensitive individual fitness decreased by cold juvenile temperatures, as a direct effect of the substantial developmental delay, once worms returned to more favourable temperature, they shifted their reproductive schedule towards early reproduction. Therefore, when focusing on the post-treatment period, the reproductive rate increased even though lifetime reproductive success was unaffected. Surprisingly, compensatory growth did not reduce adult lifespan. In contrast to the findings for wild-type worms, juvenile temperature did not induce compensatory or slowed-down growth in the trpa-1 knockout mutants. C_LIO_LIWe thus show that the trpa-1 is involved in the network regulating temperature-induced compensatory growth in C. elegans and that this compensatory growth can influence the reproductive rate. C_LI